A simulated SummarizedExperiment-class object representing the expression of 100 cells across 5 genes. This object is used as an example dataset throughout TREG.

sce_zero_test

Format

A SummarizedExperiment-class object with 5 rows and 100 columns.

Details

The colData of the object contains demo sample information about the cell, that were designed to be used as group_col, (such as cell_type, donor, and region).

The expression of the 5 genes were designed to show a range of Proportion Zeros across groups for different genes. The overall prop_zero for these theoretical genes are:

  • g100: prop_zero = 1.00

  • g50: prop_zero = 0.50

  • g0: prop_zero = 0.00

  • gOffOn: prop_zero = 0.50

  • gVar: prop_zero = 0.54