recountWorkflow 1.11.2

SIGNIFICANT USER-VISIBLE CHANGES

  • Documentation website is now available at http://LieberInstitute.github.io/recountWorkflow/. It gets updated with every commit on the master branch (bioc-devel) using GitHub Actions and pkgdown.
  • Added a NEWS.md file to track changes to the package.

recountWorkflow 1.11.2

BUG FIXES

  • Fix the spelling of RIN to rin now that all SRA columns are in lower case.
  • Fix the DESCRIPTION file (had a missing comma).

recountWorkflow 1.11.1

NEW FEATURES

  • Piggyback on GenomicState now that this package produces all the pieces needed for making the ER plots.
  • Potentially everything works on Windows now that rtracklayer::import.bw() seems to work there. But I haven’t tested it.

BUG FIXES

  • Update SRARunTable.txt reading code since they changed the format on delivered by SRA. Adjust variables accordingly.

# recountWorkflow 1.7.2

BUG FIXES

# recountWorkflow 1.7.1

BUG FIXES

  • Fix the ftp url for the Gencode v25 gtf file.

# recountWorkflow 1.3.1

SIGNIFICANT USER-VISIBLE CHANGES

  • Use BiocManager

recountWorkflow 0.99.0

NEW FEATURES

  • Created the workflow.