SIGNIFICANT USER-VISIBLE CHANGES
- Documentation website is now available at http://LieberInstitute.github.io/recountWorkflow/. It gets updated with every commit on the master branch (bioc-devel) using GitHub Actions and pkgdown.
- Added a
NEWS.md file to track changes to the package.
BUG FIXES
- Fix the spelling of RIN to rin now that all SRA columns are in lower case.
- Fix the DESCRIPTION file (had a missing comma).
NEW FEATURES
- Piggyback on GenomicState now that this package produces all the pieces needed for making the ER plots.
- Potentially everything works on Windows now that rtracklayer::import.bw() seems to work there. But I haven’t tested it.
BUG FIXES
- Update SRARunTable.txt reading code since they changed the format on delivered by SRA. Adjust variables accordingly.
# recountWorkflow 1.7.2
BUG FIXES
# recountWorkflow 1.7.1
BUG FIXES
- Fix the ftp url for the Gencode v25 gtf file.
# recountWorkflow 1.3.1
SIGNIFICANT USER-VISIBLE CHANGES