parallelization

Using Space Ranger at JHPCE

By Nick Eagles As part of recent LIBD work with spatial gene expression, I recently was recommended the tool Space Ranger, which provides software pipelines walking Visium spatial RNA-seq samples through the steps we ultimately need to explore gene expression coupled with spatial information. In this blog post, I’ll explain how to start using Space Ranger at JHPCE, focusing heavily on the set-up details relevant to this cluster in particular.