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Posts with the rstats category can also be found at RBloggers and R Weekly.

HAPPY HOLIDAYS!!!🎉⛄🎆🍾❄ In the spirit of the coming new year and new beginnings, we created a tutorial for getting started or restarted with R. If you are new to R or have dabbled in R but haven’t used it much recently, then this post is for you. We will focus on data classes and types, as well as data wrangling, and we will provide basic statistics and basic plotting examples using real data.

By Amy Peterson Studying genetic differential expression using postmortem human brain tissue requires an understanding of the effect brain tissue degradation has on genetic expression. Particularly when brain tissue degradation confounds1 the differences in gene expression levels between subject groups. This problem of confounding necessitates measures from a control dataset of postmortem tissue from individuals who do not have the outcome of interest. Doing so provides a comparative measure of the impact of tissue degradation on expression that can then be used in a case-control study to examine the impact of the outcome of interest on genetic expression.

Every six months the Bioconductor project releases it’s new version of packages. This allows developers a time window to try out new methods and test them rigorously before releasing them to the community at large. It also means that this is an exciting time 🎉. With every release there are dozens1 of new software packages. Bioconductor version 3.8 was just released on Halloween: October 31st, 2018. Thus, this is the perfect time to browse through their descriptions and find out what’s new that can be of use to your research.

To carry on our momentum from a few weeks ago from our useR!2018 remote notes blog post, this time we will be summarizing the Demystifying Data Sience 2018 conference for which you can register for free. We are just following David Robinson’s advice to blog all the time! So what should you blog about? @drob says no matter what stage you're at in your career, you have a lot to share.

For our club meeting today we were going to summarize the Demystifying Data Science conference but we forgot that the videos are not released yet. Oops, we'll have to postpone our blog post. We didn't read the fine print that talk recordings will be available sometime next week. Sorry about that! — LIBD rstats club (@LIBDrstats) July 27, 2018 So we adjusted plans and decided to continue our work on the UpSetR (Gehlenborg, 2016) package by Nils Gehlenborg.

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Club

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Continuous rstats learning

R programming, Genomics, Neuroscience, Epigenetics, Psychiatry, Developmental neurobiology

Founders

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Carrie Wright, PhD

Research Associate

Genomics, Non-coding RNA, Gene Expression, R programming, Biostatistics, Visualization, Education

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Emily E. Burke

Staff Scientist

R programming, Biostatistics, Genomics, EHRs, Visualization

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Leonardo Collado-Torres, PhD

Staff Scientist II

Genomics, R programming, Biostatistics, Teaching, Diversity

Club Members

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Anonymous

LIBD employee

R programming, Neuroscience

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Emily E. Burke

Staff Scientist

R programming, Biostatistics, Genomics, EHRs, Visualization

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Leonardo Collado-Torres, PhD

Staff Scientist II

Genomics, R programming, Biostatistics, Teaching, Diversity

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Madhavi Tippani, MS

Research Associate

R programming, Matlab, Imaging

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Nick Eagles, BS

Research Assistant

R programming, Bioinformatics

Club Alumni

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Amy Peterson, MPH

MPH 2017-2018

R programming, Biostatistics, Clinical Research

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Amanda J. Price, PhD

Postdoctoral Fellow

R programming, Epigenetics, Developmental neurobiology

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Carrie Wright, PhD

Research Associate

Genomics, Non-coding RNA, Gene Expression, R programming, Biostatistics, Visualization, Education

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Stephen A. Semick

Research Assistant 2016-2018

R programming, Genomics, Neuroscience, Medicine

Contact

Code of conduct

Code of conduct

The LIBD rstats club is committed to providing a welcoming and harassment-free experience for everyone, regardless of gender, gender identity and expression, age, sexual orientation, disability, physical appearance, body size, race, ethnicity, religion (or lack thereof), or technology choices. We do not tolerate harassment of website participants in any form. Sexual language and imagery is not appropriate for any venue related to this website, including blog posts, talks, workshops, parties, Twitter and other online media. Website participants violating these rules may be sanctioned or expelled from the website at the discretion of the LIBD rstats club members.

This code of conduct applies to all participants, including LIBD rstats club members and applies to all modes of interaction, both in-person and online, including LieberInstitute GitHub project repos, the LIBD rstats club comments section, Slack channels and Twitter.

LIBD rstats club participants agree to:

  • Be considerate in speech and actions, and actively seek to acknowledge and respect the boundaries of fellow participants.
  • Refrain from demeaning, discriminatory, or harassing behavior and speech. Harassment includes, but is not limited to: deliberate intimidation; stalking; unwanted photography or recording; sustained or willful disruption of talks or other events; inappropriate physical contact; use of sexual or discriminatory imagery, comments, or jokes; and unwelcome sexual attention. If you feel that someone has harassed you or otherwise treated you inappropriately, please alert any LIBD rstats club member.
  • Take care of each other. Alert a LIBD rstats club member if you notice a dangerous situation, someone in distress, or violations of this code of conduct, even if they seem inconsequential.

If any participant engages in harassing behavior, the LIBD rstats club organizers may take any lawful action we deem appropriate, including but not limited to warning the offender or asking the offender to leave the website. (If you feel you have been unfairly accused of violating this code of conduct, you should contact the LIBD rstats club organizers with a concise description of your grievance.)

The above text has been modified from the rOpenSci 2018 unconference code of conduct, which in turn states that parts of the text are licensed CC BY-SA 4.0. Credit to SRCCON. Also inspired by the Ada Initiative’s “how to design a code of conduct for your community.”