This function checks that the modeling_results object has the appropriate structure.
For more details please check the vignette documentation.
check_modeling_results(modeling_results)Defaults to the output of
fetch_data(type = 'modeling_results'). This is a list of tables with the
columns f_stat_* or t_stat_* as well as p_value_* and fdr_* plus
ensembl. The column name is used to extract the statistic results, the
p-values, and the FDR adjusted p-values. Then the ensembl column is used
for matching in some cases. See fetch_data() for more details. Typically
this is the set of reference statistics used in layer_stat_cor().
The input object if all checks are passed.
Other Check input functions:
check_sce(),
check_sce_layer(),
check_spe()
if (!exists("modeling_results")) {
modeling_results <- fetch_data(type = "modeling_results")
}
#> 2024-12-16 21:50:07.70335 loading file /github/home/.cache/R/BiocFileCache/5db39a09009_Human_DLPFC_Visium_modeling_results.Rdata%3Fdl%3D1
## Check the object
xx <- check_modeling_results(modeling_results)