Package index • visiumStitched

All functions

add_array_coords(): Add transformed array and pixel coordinates to a SpatialExperiment

add_overlap_info(): Add info about how spots overlap among capture areas

as.Seurat(): Convert a SpatialExperiment object to a Seurat object

build_SpatialExperiment(): Build stitched SpatialExperiment

merge_overlapping(): Merge overlapping spots

prep_fiji_image() prep_fiji_coords(): Prepare Fiji outputs for building a SpatialExperiment

rescale_fiji_inputs(): Write same-scale hires images for input to Fiji