Package index • visiumStitched

All functions

add_array_coords(): Add transformed array and pixel coordinates to a SpatialExperiment
add_overlap_info(): Add info about how spots overlap among capture areas
as.Seurat(): Convert a SpatialExperiment object to a Seurat object
build_SpatialExperiment(): Build stitched SpatialExperiment
merge_overlapping(): Merge overlapping spots
prep_fiji_image() prep_fiji_coords(): Prepare Fiji outputs for building a SpatialExperiment
rescale_fiji_inputs(): Write same-scale hires images for input to Fiji