NEWS.md
SIGNIFICANT USER-VISIBLE CHANGES
is_travis() since now all code is tested at GitHub Actions.accounting_files parameter to the accounting() family of functions now that archive files have been created at JHPCE for this type of SGE job information.NEWS.md file to track changes to the package.parse_task_ids() and parse_task_ids_builder() for parsing SGE task IDs.array_submit() for submitting an SGE array job for a given set of input task IDs.job_single() for creating a shell file for a new job that can be submitted using qsub.job_loop() for creating a function that loops through a bash variable(s) to create shell scripts that are then submitted to SGE using qsub.log_date() and log_jobid() to find the start/end date from an SGE log file as well as the job id.array_submit_num() for submitting an array job given a maximum task number. This function deals with the array task maximum imposed by JHPCE of 75000 tasks per array job.accounting() with helper functions accounting_read() and accounting_parse() which read and parse the qacct information from SGE on a set of SGE job IDs and ultimately return a data.frame with the job summary information.