Changelog • slurmjobs

NEW FEATURES

New function renumber() renames a set of scripts along with their associated logs and content

BUG FIXES

job_loop() now respects absolute paths to the scripts to create

BUG FIXES

Fix currently running jobs crashing job_report()

BUG FIXES

Recognize/ handle OUT_OF_MEMORY job status, fixing a fatal error in job_report()

BUG FIXES

Fix submission of jobs, modification of the appropriate shell script, and finding of log files when using array_submit() with an absolute path to the name parameter

Use the HOSTNAME instead of SLURMD_NODENAME environment variable to determine host running a SLURM job

BUG FIXES

Recognize cancelled jobs as completed, allowing job_report() to continue without errors when attempting to retrieve memory info for finished jobs

job_single() and job_loop() accept a new parameter, time_limit, which default to 1 day

NEW FEATURES

job_single(), job_loop(), and array_submit() now may accept a name, relative path, or absolute path as the name argument. This means the working directory is no longer relevant in successfully calling these functions
job_info() and job_report() now also return a wallclock_time column, giving the elapsed wallclock time of jobs as difftimes

NEW FEATURES

Two additional monitoring functions: job_report() and partition_info()
Two new job-submission functions: array_submit() and job_loop()
New data included as part of the package: job_info_df and partition_df. Example outputs of job_info() and partition_info()

SIGNIFICANT USER-VISIBLE CHANGES

Memory for job_single() and job_loop() is now specified in total (i.e. through --mem) instead of per core (i.e. through --mem-per-cpu)
Complete vignette and documentation

NEW FEATURES

Added a NEWS.md file to track changes to the package.
Added core files (such as DESCRIPTION, NAMESPACE, etc) to make slurmjobs a Bioconductor-style package

SIGNIFICANT USER-VISIBLE CHANGES

Experimental job_info() function
Experimental job_single() function