Function reference • recount3

All functions
`annotation_ext()`	Obtain the file extension for a given organism and annotation
`annotation_options()`	List available annotation options for a given organism
`available_projects()`	List available projects in recount3
`available_samples()`	List available samples in recount3
`compute_read_counts()`	Compute read counts
`compute_scale_factors()`	Compute count scaling factors
`create_hub()`	Create UCSC track hub for BigWig files
`create_rse()`	Create a recount3 RangedSummarizedExperiment gene or exon object
`create_rse_manual()`	Internal function for creating a recount3 RangedSummarizedExperiment object
`expand_sra_attributes()`	Expand SRA attributes
`file_retrieve()`	Download a remote file and cache it to re-use later
`is_paired_end()`	Guess whether the samples are paired end
`locate_url()`	Construct the URL to access a particular `recount3` file
`locate_url_ann()`	Construct the URL to a recount3 annotation file
`project_homes()`	Find available project home options
`read_counts()`	Read a counts file
`read_metadata()`	Read the metadata files
`recount3_cache()`	Specify where to cache the recount3 files
`recount3_cache_files()`	Locate recount3 cached files
`recount3_cache_rm()`	Remove recount3 cached files
`transform_counts()`	Transform the raw counts provided by the recount3 project

Reference