Reference

All functions
add_array_coords()	Add transformed array and pixel coordinates to a SpatialExperiment
add_overlap_info()	Add info about how spots overlap among capture areas
build_spe()	Build stitched SpatialExperiment
prep_imagej_coords()	Apply transform info from ImageJ XML output
prep_imagej_image()	Create low-res images and scale factors from high-res ImageJ output images
rescale_imagej_inputs()	Write same-scale hires images for input to ImageJ
spe_small	Small SpatialExperiment of stitched capture areas
spe_to_seurat()	Convert a SpatialExperiment object to a Seurat object
spot_plot()	Spatial plots of discrete or continuous features for stitched-together capture areas.