Bisque Estimated Cell Type Proportions for DLPFC bulk RNA-seq data

Source: R/data.R

Cell type proportions estimated by Bisque for DLPFC bulk RNA-seq data set, utilizing DLPFC snRNA-seq data as the reference data.

data("est_prop")

Format

A data.frame object.

Details

16.79 kB

These are the columns of the data.frame object:

  • Astro: estimated proportions of Astrocyte cells

  • EndoMural: estimated proportions of Endothelia + Mural cells

  • Micro: estimated proportions of Microglia cells

  • Oligo: estimated proportions of Oligodendrocyte Cells

  • OPC: estimated proportions of Oligodendrocyte Precursor Cells

  • Excit: estimated proportions for Excitatory Neurons

  • Inhib: estimated proportions for Inhibitory Neurons

Examples

## R Note that the `rowSums(est_prop)` is equal to 1,
## with a small error tolerance.
data("est_prop")
summary(rowSums(est_prop) - 1)
#>       Min.    1st Qu.     Median       Mean    3rd Qu.       Max. 
#> -1.110e-16  2.220e-16  2.220e-16  2.493e-16  4.441e-16  6.661e-16 

## You can check this yourself with:
all(round(rowSums(est_prop), 3) == 1)
#> [1] TRUE

# To view source
system.file("extdata", "data-raw", "est_prop.R", package = "DeconvoBuddies")
#> [1] "/__w/_temp/Library/DeconvoBuddies/extdata/data-raw/est_prop.R"