Package index • DeconvoBuddies

All functions
`RNAScope_prop`	Cell Type Proportions estimated from RNAScope
`create_cell_colors()`	Create a cell color pallet for plots
`est_prop`	Test Estimated Cell Type Proportions
`fetch_deconvo_data()`	Download Human DLPFC Deconvolution Data
`findMarkers_1vAll()`	Calculate 1 vs. All standard fold change for each gene x cell type, wrapper function for `scran::findMarkers()`.
`get_mean_ratio()`	Get Mean Ratio for Each Gene x Cell Type
`make_test_sce()`	Simulate a SingleCellExperiment for testing.
`marker_test`	Markers stats from sce_DLPFC_example
`plot_composition_bar()`	Create barplot of average cell type composition
`plot_gene_express()`	Plot the gene expression of a list of genes in a SCE object
`plot_marker_express()`	Plot gene expression violin plots for top marker genes for one cell type
`plot_marker_express_ALL()`	Plot the top marker genes for ALL cell types
`plot_marker_express_List()`	Plot a nested list of genes as a multi-page pdf
`rse_bulk_test`	Test bulk rse dataset
`sce_ab`	Toy SCE object for testing

Reference