PCs from transcripts

This function returns the pcs from the obtained RangedSummarizedExperiment object of selected transcripts

getPCs(rse_tx, assayname = "tpm")

Arguments

rse_tx

Ranged Summarizeed Experiment with only trancsripts selected for qsva

assayname

character string specifying the name of the assay desired in rse_tx

Value

prcomp object generated by taking the pcs of degraded transcripts

Examples

getPCs(covComb_tx_deg, "tpm")