All functions

DEqual()

Differential expression quality (DEqual) plot

check_tx_names()

Check validity of transcript vectors

covComb_tx_deg

RSE object of RNA-seq data that serves as output for degradation analysis

degradation_tstats

Degradation time t-statistics

getDegTx()

Obtain expression matrix for degraded transcripts

getPCs()

PCs from transcripts

get_qsvs()

Generate matrix of qsvs

k_qsvs()

Apply num.sv algorithm to determine the number of pcs to be included

qSVA()

A wrapper function used to perform qSVA in one step.

select_transcripts()

Select transcripts associated with degradation

transcripts

Transcripts for Degradation Models