Changelog

Source: NEWS.md

qsvaR 1.7.0

BUG FIXES

• Fixed the error messages displayed by getDegTx(), k_qsvs(),get_qsvs(), getPCs(), DEqual() and qSVA() to handle different types of situations.

• Improved unit tests for getDegTx(), k_qsvs(),get_qsvs(), getPCs(),DEqual() and qSVA().

qsvaR 1.6.0

BUG FIXES

• getDegTx() can handle ENSEMBL IDs as input.
• DEqual() can handle ENSEMBL IDs as input.
• Improved unit tests for getDegTx() and DEqual().

qsvaR 1.5.3

BUG FIXES

• Fixed the error messages displayed by k_qsvs() to handle different types of situations. We implemented this update with @HediaTnani, @reneegf, and

qsvaR 1.5.2

BUG FIXES

• Fixed a bug in qSVA() which was not passing sig_transcripts to getDegTx(). Related to https://github.com/LieberInstitute/qsvaR/issues/29.
• Fixed the documentation to highlight when users should use set.seed() to ensure the reproducibility of their results. Related to https://github.com/LieberInstitute/qsvaR/issues/28.

qsvaR 1.5.1

SIGNIFICANT USER-VISIBLE CHANGES

• Hedia Tnani is now the maintainer of qsvaR.

qsvaR 0.99.0

NEW FEATURES

• This is the initial version of the second iteration of the qSVA framework, which was initially described by Jaffe et al, PNAS, 2017 https://doi.org/10.1073/pnas.1617384114.