This function is used to check if the tx1 and tx2 are GENCODE or ENSEMBL and print an error message if it's not and return a character vector of transcripts in tx2 that are in tx1.
check_tx_names(tx1, tx2, arg_name1, arg_name2)A character() vector of GENCODE or ENSEMBL transcripts.
A character() vector of GENCODE or ENSEMBL transcripts.
A character(1) vector of description of tx1
A character(1) vector of description of tx2
A
character() vector of transcripts in tx2 that are in tx1.
sig_transcripts = select_transcripts("cell_component")
check_tx_names(rownames(covComb_tx_deg), sig_transcripts, 'rownames(covComb_tx_deg)', 'sig_transcripts')
#> [1] "ENST00000442987.3" "ENST00000623083.3"
#> [3] "ENST00000424587.6" "ENST00000599771.6"
#> [5] "ENST00000416931.1" "ENST00000457540.1"
#> [7] "ENST00000414273.1" "ENST00000506640.2"
#> [9] "ENST00000587530.5" "ENST00000398216.2"
#> [11] "ENST00000379370.6" "ENST00000461111.1"
#> [13] "ENST00000480643.1" "ENST00000492936.5"
#> [15] "ENST00000467278.5" "ENST00000379037.6"
#> [17] "ENST00000472541.5" "ENST00000354980.7"
#> [19] "ENST00000478065.5" "ENST00000462432.5"
#> [21] "ENST00000359060.5" "ENST00000477990.1"
#> [23] "ENST00000598846.1" "ENST00000417099.1"
#> [25] "ENST00000378536.4" "ENST00000469374.5"
#> [27] "ENST00000513135.5" "ENST00000337907.7"
#> [29] "ENST00000377424.8" "ENST00000377403.6"
#> [31] "ENST00000340305.9" "ENST00000474216.5"
#> [33] "ENST00000362477.1" "ENST00000616661.4"
#> [35] "ENST00000400797.3" "ENST00000375759.7"
#> [37] "ENST00000263511.8" "ENST00000392963.5"
#> [39] "ENST00000420513.1" "ENST00000599908.1"
#> [41] "ENST00000449853.2" "ENST00000412962.3"
#> [43] "ENST00000635081.1" "ENST00000375541.9"
#> [45] "ENST00000494191.6" "ENST00000463860.5"
#> [47] "ENST00000375415.5" "ENST00000457194.6"
#> [49] "ENST00000375003.6" "ENST00000487117.1"
#> [51] "ENST00000431514.2" "ENST00000430808.1"
#> [53] "ENST00000464457.1" "ENST00000464577.1"
#> [55] "ENST00000374642.7" "ENST00000374640.8"
#> [57] "ENST00000314933.6" "ENST00000450454.6"
#> [59] "ENST00000374561.5" "ENST00000463312.1"
#> [61] "ENST00000486541.1" "ENST00000593639.5"
#> [63] "ENST00000374379.8" "ENST00000473314.6"
#> [65] "ENST00000361547.6" "ENST00000466284.1"
#> [67] "ENST00000513116.1" "ENST00000374291.5"
#> [69] "ENST00000470037.1" "ENST00000374278.7"
#> [71] "ENST00000487944.5" "ENST00000618852.4"
#> [73] "ENST00000247087.9" "ENST00000465645.1"
#> [75] "ENST00000373839.7" "ENST00000413987.1"
#> [77] "ENST00000363217.1" "ENST00000602813.1"
#> [79] "ENST00000294507.3" "ENST00000440538.6"
#> [81] "ENST00000458715.5" "ENST00000465256.5"
#> [83] "ENST00000373510.8" "ENST00000373481.7"
#> [85] "ENST00000372969.7" "ENST00000372967.3"
#> [87] "ENST00000372915.7" "ENST00000472385.1"
#> [89] "ENST00000487871.1" "ENST00000565390.2"
#> [91] "ENST00000321358.11" "ENST00000357658.3"
#> [93] "ENST00000406439.6" "ENST00000634258.1"
#> [95] "ENST00000562955.1" "ENST00000488433.5"
#> [97] "ENST00000363299.1" "ENST00000372192.3"
#> [99] "ENST00000469150.1" "ENST00000319928.7"
#> [101] "ENST00000574428.5" "ENST00000366181.2"
#> [103] "ENST00000483007.1" "ENST00000460612.5"
#> [105] "ENST00000569869.1" "ENST00000636386.1"
#> [107] "ENST00000413489.5" "ENST00000634281.1"
#> [109] "ENST00000498273.1" "ENST00000637208.1"
#> [111] "ENST00000424995.1" "ENST00000327299.7"
#> [113] "ENST00000371039.5" "ENST00000502413.2"
#> [115] "ENST00000355356.3" "ENST00000524915.5"
#> [117] "ENST00000370645.8" "ENST00000451137.6"
#> [119] "ENST00000294678.6" "ENST00000331835.9"
#> [121] "ENST00000355754.6" "ENST00000610020.1"
#> [123] "ENST00000602631.1" "ENST00000370282.7"
#> [125] "ENST00000334047.11" "ENST00000480356.1"
#> [127] "ENST00000370206.8" "ENST00000561881.1"
#> [129] "ENST00000418344.1" "ENST00000457507.1"
#> [131] "ENST00000361355.8" "ENST00000309851.9"
#> [133] "ENST00000256593.7" "ENST00000361066.6"
#> [135] "ENST00000329608.10" "ENST00000369799.9"
#> [137] "ENST00000359172.3" "ENST00000271324.5"
#> [139] "ENST00000562952.1" "ENST00000369748.8"
#> [141] "ENST00000442484.2" "ENST00000439736.1"
#> [143] "ENST00000428411.5" "ENST00000421157.1"
#> [145] "ENST00000358528.8" "ENST00000369500.3"
#> [147] "ENST00000493622.5" "ENST00000612320.1"
#> [149] "ENST00000613290.4" "ENST00000583271.5"
#> [151] "ENST00000612480.2" "ENST00000609741.2"
#> [153] "ENST00000605551.2" "ENST00000384476.1"
#> [155] "ENST00000610976.1" "ENST00000582401.5"
#> [157] "ENST00000622244.4" "ENST00000614586.2"
#> [159] "ENST00000617844.4" "ENST00000613714.2"
#> [161] "ENST00000617864.3" "ENST00000615281.4"
#> [163] "ENST00000415381.1" "ENST00000609678.1"
#> [165] "ENST00000384610.1" "ENST00000622328.1"
#> [167] "ENST00000516326.1" "ENST00000619691.1"
#> [169] "ENST00000364313.1" "ENST00000621066.4"
#> [171] "ENST00000619981.4" "ENST00000369347.8"
#> [173] "ENST00000612094.1" "ENST00000460027.1"
#> [175] "ENST00000466343.2" "ENST00000612135.1"
#> [177] "ENST00000610119.1" "ENST00000611931.4"
#> [179] "ENST00000617712.1" "ENST00000578186.2"
#> [181] "ENST00000477558.1" "ENST00000369095.5"
#> [183] "ENST00000369068.4" "ENST00000479372.1"
#> [185] "ENST00000480760.1" "ENST00000483763.5"
#> [187] "ENST00000485040.5" "ENST00000368809.1"
#> [189] "ENST00000271638.2" "ENST00000382265.3"
#> [191] "ENST00000368801.2" "ENST00000368738.3"
#> [193] "ENST00000368733.3" "ENST00000368719.8"
#> [195] "ENST00000368706.8" "ENST00000634544.1"
#> [197] "ENST00000417868.1" "ENST00000361217.8"
#> [199] "ENST00000485359.1" "ENST00000356205.8"
#> [201] "ENST00000368575.3" "ENST00000509409.5"
#> [203] "ENST00000368489.3" "ENST00000463920.5"
#> [205] "ENST00000506037.1" "ENST00000496332.5"
#> [207] "ENST00000481822.1" "ENST00000497188.1"
#> [209] "ENST00000443231.5" "ENST00000368336.9"
#> [211] "ENST00000465270.5" "ENST00000456112.1"
#> [213] "ENST00000313146.10" "ENST00000482651.5"
#> [215] "ENST00000497286.5" "ENST00000415019.1"
#> [217] "ENST00000368097.8" "ENST00000289902.1"
#> [219] "ENST00000436743.5" "ENST00000605467.1"
#> [221] "ENST00000367889.7" "ENST00000489398.1"
#> [223] "ENST00000524967.5" "ENST00000239461.10"
#> [225] "ENST00000367694.2" "ENST00000414890.1"
#> [227] "ENST00000473640.1" "ENST00000367619.7"
#> [229] "ENST00000411509.1" "ENST00000479721.5"
#> [231] "ENST00000471010.1" "ENST00000400968.6"
#> [233] "ENST00000348564.10" "ENST00000461742.6"
#> [235] "ENST00000367302.5" "ENST00000255409.7"
#> [237] "ENST00000290551.4" "ENST00000341360.6"
#> [239] "ENST00000637508.1" "ENST00000367175.1"
#> [241] "ENST00000444037.1" "ENST00000404977.6"
#> [243] "ENST00000493914.5" "ENST00000512826.5"
#> [245] "ENST00000471392.1" "ENST00000495396.5"
#> [247] "ENST00000492085.1" "ENST00000503221.1"
#> [249] "ENST00000452580.2" "ENST00000481872.6"
#> [251] "ENST00000419301.1" "ENST00000515494.5"
#> [253] "ENST00000476153.6" "ENST00000489617.5"
#> [255] "ENST00000367139.7" "ENST00000357714.5"
#> [257] "ENST00000608023.5" "ENST00000455509.1"
#> [259] "ENST00000486666.5" "ENST00000563417.1"
#> [261] "ENST00000440104.1" "ENST00000492565.1"
#> [263] "ENST00000540997.2" "ENST00000443112.6"
#> [265] "ENST00000537914.5" "ENST00000453943.5"
#> [267] "ENST00000445339.1" "ENST00000366654.4"
#> [269] "ENST00000492101.1" "ENST00000447095.5"
#> [271] "ENST00000319653.13" "ENST00000424448.2"
#> [273] "ENST00000451408.2" "ENST00000476722.6"
#> [275] "ENST00000493334.1" "ENST00000366523.5"
#> [277] "ENST00000566597.5" "ENST00000272067.10"
#> [279] "ENST00000602387.5" "ENST00000469147.5"
#> [281] "ENST00000433382.5" "ENST00000497597.5"
#> [283] "ENST00000452495.1" "ENST00000453806.1"
#> [285] "ENST00000454224.1" "ENST00000496383.5"
#> [287] "ENST00000355346.8" "ENST00000272227.7"
#> [289] "ENST00000418420.1" "ENST00000404666.6"
#> [291] "ENST00000469867.1" "ENST00000406659.3"
#> [293] "ENST00000447070.1" "ENST00000507184.5"
#> [295] "ENST00000319406.8" "ENST00000295065.9"
#> [297] "ENST00000578326.2" "ENST00000402297.5"
#> [299] "ENST00000606229.1" "ENST00000626865.2"
#> [301] "ENST00000609128.5" "ENST00000409328.5"
#> [303] "ENST00000443213.5" "ENST00000409946.5"
#> [305] "ENST00000263736.4" "ENST00000263734.4"
#> [307] "ENST00000622819.1" "ENST00000636736.1"
#> [309] "ENST00000462791.1" "ENST00000406053.5"
#> [311] "ENST00000395315.2" "ENST00000272317.10"
#> [313] "ENST00000589496.2" "ENST00000394457.7"
#> [315] "ENST00000471542.5" "ENST00000404992.6"
#> [317] "ENST00000420673.5" "ENST00000449444.5"
#> [319] "ENST00000405289.5" "ENST00000409562.7"
#> [321] "ENST00000436321.5" "ENST00000449995.1"
#> [323] "ENST00000428647.1" "ENST00000489327.1"
#> [325] "ENST00000406297.7" "ENST00000234454.5"
#> [327] "ENST00000520186.1" "ENST00000450720.5"
#> [329] "ENST00000396049.4" "ENST00000476689.5"
#> [331] "ENST00000444342.2" "ENST00000409724.5"
#> [333] "ENST00000263864.9" "ENST00000306368.8"
#> [335] "ENST00000421951.5" "ENST00000390237.2"
#> [337] "ENST00000473726.1" "ENST00000635968.1"
#> [339] "ENST00000544283.5" "ENST00000608531.1"
#> [341] "ENST00000568768.5" "ENST00000486055.1"
#> [343] "ENST00000448494.1" "ENST00000488084.1"
#> [345] "ENST00000305510.3" "ENST00000613749.4"
#> [347] "ENST00000610408.4" "ENST00000612970.4"
#> [349] "ENST00000596026.5" "ENST00000604397.5"
#> [351] "ENST00000620272.4" "ENST00000609751.2"
#> [353] "ENST00000359901.8" "ENST00000451664.1"
#> [355] "ENST00000289371.10" "ENST00000264258.7"
#> [357] "ENST00000469971.5" "ENST00000233154.8"
#> [359] "ENST00000393321.2" "ENST00000481729.1"
#> [361] "ENST00000393283.5" "ENST00000336905.3"
#> [363] "ENST00000448359.1" "ENST00000302558.7"
#> [365] "ENST00000538033.2" "ENST00000467600.5"
#> [367] "ENST00000494909.5" "ENST00000488208.1"
#> [369] "ENST00000476149.1" "ENST00000355857.7"
#> [371] "ENST00000462958.5" "ENST00000462306.5"
#> [373] "ENST00000415406.1" "ENST00000445782.2"
#> [375] "ENST00000491265.1" "ENST00000438378.2"
#> [377] "ENST00000452011.1" "ENST00000465868.5"
#> [379] "ENST00000470729.5" "ENST00000409869.5"
#> [381] "ENST00000460377.1" "ENST00000439252.1"
#> [383] "ENST00000409216.5" "ENST00000429684.1"
#> [385] "ENST00000624969.1" "ENST00000421875.5"
#> [387] "ENST00000409050.1" "ENST00000263816.7"
#> [389] "ENST00000492964.1" "ENST00000435711.5"
#> [391] "ENST00000453026.6" "ENST00000264065.11"
#> [393] "ENST00000429412.1" "ENST00000481132.5"
#> [395] "ENST00000361099.7" "ENST00000304141.4"
#> [397] "ENST00000458054.1" "ENST00000491249.1"
#> [399] "ENST00000418022.1" "ENST00000409468.1"
#> [401] "ENST00000473565.5" "ENST00000425226.1"
#> [403] "ENST00000376135.5" "ENST00000449699.5"
#> [405] "ENST00000625193.1" "ENST00000448277.5"
#> [407] "ENST00000411432.5" "ENST00000345146.6"
#> [409] "ENST00000607412.1" "ENST00000420712.1"
#> [411] "ENST00000171887.8" "ENST00000258412.7"
#> [413] "ENST00000445635.5" "ENST00000449707.5"
#> [415] "ENST00000302625.5" "ENST00000497882.5"
#> [417] "ENST00000463792.5" "ENST00000485813.5"
#> [419] "ENST00000497589.1" "ENST00000607654.1"
#> [421] "ENST00000419964.1" "ENST00000488477.2"
#> [423] "ENST00000431952.1" "ENST00000494901.5"
#> [425] "ENST00000463834.1" "ENST00000434477.5"
#> [427] "ENST00000467665.1" "ENST00000492481.1"
#> [429] "ENST00000409907.7" "ENST00000244815.9"
#> [431] "ENST00000607357.1" "ENST00000495100.1"
#> [433] "ENST00000486058.5" "ENST00000320389.11"
#> [435] "ENST00000431776.5" "ENST00000415042.1"
#> [437] "ENST00000463388.1" "ENST00000483962.1"
#> [439] "ENST00000479427.5" "ENST00000494132.1"
#> [441] "ENST00000452802.5" "ENST00000485983.6"
#> [443] "ENST00000470951.5" "ENST00000431285.5"
#> [445] "ENST00000302463.10" "ENST00000602976.1"
#> [447] "ENST00000424442.5" "ENST00000412055.5"
#> [449] "ENST00000460129.5" "ENST00000414969.2"
#> [451] "ENST00000618604.4" "ENST00000613206.1"
#> [453] "ENST00000254508.6" "ENST00000255320.6"
#> [455] "ENST00000412097.5" "ENST00000492552.5"
#> [457] "ENST00000301821.10" "ENST00000301831.8"
#> [459] "ENST00000490003.5" "ENST00000441594.5"
#> [461] "ENST00000339420.6" "ENST00000296130.4"
#> [463] "ENST00000265562.4" "ENST00000470959.1"
#> [465] "ENST00000395734.7" "ENST00000464294.1"
#> [467] "ENST00000328333.12" "ENST00000164024.4"
#> [469] "ENST00000476645.1" "ENST00000484115.5"
#> [471] "ENST00000446471.1" "ENST00000495880.1"
#> [473] "ENST00000321725.10" "ENST00000472528.5"
#> [475] "ENST00000636627.1" "ENST00000477024.5"
#> [477] "ENST00000583516.1" "ENST00000360997.6"
#> [479] "ENST00000464064.5" "ENST00000474531.5"
#> [481] "ENST00000472513.1" "ENST00000478570.5"
#> [483] "ENST00000491583.1" "ENST00000608169.5"
#> [485] "ENST00000463183.1" "ENST00000485126.1"
#> [487] "ENST00000489193.1" "ENST00000629295.1"
#> [489] "ENST00000483969.5" "ENST00000489060.1"
#> [491] "ENST00000496294.1" "ENST00000484698.5"
#> [493] "ENST00000464192.1" "ENST00000478791.1"
#> [495] "ENST00000465803.1" "ENST00000295633.7"
#> [497] "ENST00000424703.6" "ENST00000469870.1"
#> [499] "ENST00000314583.7" "ENST00000296161.8"
#> [501] "ENST00000483793.5" "ENST00000612737.1"
#> [503] "ENST00000477536.1" "ENST00000296220.5"
#> [505] "ENST00000614362.1" "ENST00000468859.1"
#> [507] "ENST00000393434.6" "ENST00000296233.3"
#> [509] "ENST00000509675.1" "ENST00000514908.5"
#> [511] "ENST00000464431.1" "ENST00000514355.5"
#> [513] "ENST00000324093.8" "ENST00000504808.2"
#> [515] "ENST00000468074.1" "ENST00000475711.5"
#> [517] "ENST00000624916.1" "ENST00000567488.1"
#> [519] "ENST00000392993.6" "ENST00000360060.7"
#> [521] "ENST00000305366.7" "ENST00000465804.5"
#> [523] "ENST00000491549.5" "ENST00000490357.1"
#> [525] "ENST00000497658.5" "ENST00000477531.3"
#> [527] "ENST00000334567.9" "ENST00000637681.1"
#> [529] "ENST00000412756.6" "ENST00000489868.5"
#> [531] "ENST00000460993.1" "ENST00000488149.5"
#> [533] "ENST00000468101.5" "ENST00000273794.5"
#> [535] "ENST00000310118.8" "ENST00000497070.1"
#> [537] "ENST00000406870.6" "ENST00000232014.8"
#> [539] "ENST00000496823.1" "ENST00000450760.2"
#> [541] "ENST00000454789.5" "ENST00000482913.1"
#> [543] "ENST00000410651.1" "ENST00000429897.5"
#> [545] "ENST00000445430.5" "ENST00000631288.2"
#> [547] "ENST00000626089.2" "ENST00000625338.1"
#> [549] "ENST00000445707.3" "ENST00000630663.1"
#> [551] "ENST00000601955.5" "ENST00000630675.2"
#> [553] "ENST00000631263.2" "ENST00000628754.2"
#> [555] "ENST00000485430.1" "ENST00000498018.1"
#> [557] "ENST00000416152.5" "ENST00000333602.10"
#> [559] "ENST00000481865.5" "ENST00000489628.1"
#> [561] "ENST00000570130.1" "ENST00000440850.5"
#> [563] "ENST00000435731.5" "ENST00000432047.4"
#> [565] "ENST00000434143.5" "ENST00000437008.5"
#> [567] "ENST00000507981.1" "ENST00000471364.1"
#> [569] "ENST00000510175.5" "ENST00000506646.5"
#> [571] "ENST00000513239.5" "ENST00000487902.5"
#> [573] "ENST00000476034.5" "ENST00000598370.1"
#> [575] "ENST00000314167.8" "ENST00000264748.6"
#> [577] "ENST00000513372.5" "ENST00000514248.1"
#> [579] "ENST00000505421.1" "ENST00000510632.1"
#> [581] "ENST00000637812.1" "ENST00000515571.5"
#> [583] "ENST00000513943.5" "ENST00000507028.1"
#> [585] "ENST00000505907.1" "ENST00000441093.1"
#> [587] "ENST00000511366.2" "ENST00000613973.1"
#> [589] "ENST00000508843.1" "ENST00000382470.1"
#> [591] "ENST00000515343.1" "ENST00000505089.6"
#> [593] "ENST00000509654.5" "ENST00000515495.1"
#> [595] "ENST00000606142.5" "ENST00000507794.2"
#> [597] "ENST00000454158.6" "ENST00000295955.13"
#> [599] "ENST00000504032.1" "ENST00000513977.2"
#> [601] "ENST00000508560.5" "ENST00000509886.5"
#> [603] "ENST00000623090.1" "ENST00000510932.2"
#> [605] "ENST00000514077.2" "ENST00000510785.1"
#> [607] "ENST00000508554.1" "ENST00000337881.11"
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#> [1937] "ENST00000562027.1" "ENST00000583451.1"
#> [1939] "ENST00000343516.7" "ENST00000328540.7"
#> [1941] "ENST00000561847.2" "ENST00000491073.5"
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#> [1945] "ENST00000399702.5" "ENST00000571865.1"
#> [1947] "ENST00000301740.12" "ENST00000572721.1"
#> [1949] "ENST00000576878.1" "ENST00000574331.5"
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#> [1953] "ENST00000294008.3" "ENST00000382070.7"
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#> [1963] "ENST00000545479.5" "ENST00000534720.1"
#> [1965] "ENST00000535621.6" "ENST00000455313.6"
#> [1967] "ENST00000566633.1" "ENST00000569858.1"
#> [1969] "ENST00000424133.2" "ENST00000360151.8"
#> [1971] "ENST00000287594.7" "ENST00000566490.5"
#> [1973] "ENST00000458669.1" "ENST00000537112.5"
#> [1975] "ENST00000538085.5" "ENST00000530217.2"
#> [1977] "ENST00000541810.5" "ENST00000525846.6"
#> [1979] "ENST00000545152.1" "ENST00000535716.5"
#> [1981] "ENST00000546267.5" "ENST00000532415.5"
#> [1983] "ENST00000563390.5" "ENST00000568230.5"
#> [1985] "ENST00000565844.1" "ENST00000636554.1"
#> [1987] "ENST00000542817.1" "ENST00000535190.1"
#> [1989] "ENST00000537983.1" "ENST00000543368.1"
#> [1991] "ENST00000522480.5" "ENST00000440195.2"
#> [1993] "ENST00000522841.6" "ENST00000437413.2"
#> [1995] "ENST00000542133.5" "ENST00000542338.1"
#> [1997] "ENST00000540103.1" "ENST00000543449.1"
#> [1999] "ENST00000544693.5" "ENST00000523028.5"
#> [2001] "ENST00000381448.8" "ENST00000568410.1"
#> [2003] "ENST00000551766.5" "ENST00000446662.5"
#> [2005] "ENST00000431681.5" "ENST00000418592.1"
#> [2007] "ENST00000546168.5" "ENST00000544308.5"
#> [2009] "ENST00000538509.1" "ENST00000540704.1"
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